High-dimensional mediation analysis is often associated with a multiple testing problem for detecting significant mediators. Assessing the uncertainty of this detecting process via false discovery rate (FDR) has garnered great interest. To control the FDR in multiple testing, two essential steps are involved: ranking and selection. Existing approaches either construct p-values without calibration or disregard the joint information across tests, leading to conservation in FDR control or non-optimal ranking rules for multiple hypotheses. In this paper, we develop an adaptive mediation detection procedure (referred to as AMDP) to identify relevant mediators while asymptotically controlling the FDR in high-dimensional mediation analysis. AMDP produces the optimal rule for ranking hypotheses and proposes a data-driven strategy to determine the threshold for mediator selection. This novel method captures information from the proportions of composite null hypotheses and the distribution of p-values, which turns the high dimensionality into an advantage instead of a limitation. The numerical studies on synthetic and real data sets illustrate the performances of AMDP compared with existing approaches.

Simultaneously performing variable selection and inference in high-dimensional models is an open challenge in statistics and machine learning. The increasing availability of vast amounts of variables requires the adoption of specific statistical procedures to accurately select the most important predictors in a high-dimensional space, while being able to control some form of selection error. In this work we adapt the Mirror Statistic approach to False Discovery Rate (FDR) control into a Bayesian modelling framework. The Mirror Statistic, developed in the classic frequentist statistical framework, is a flexible method to control FDR, which only requires mild model assumptions, but requires two sets of independent regression coefficient estimates, usually obtained after splitting the original dataset. Here we propose to rely on a Bayesian formulation of the model and use the posterior distributions of the coefficients of interest to build the Mirror Statistic and effectively control the FDR without the need to split the data. Moreover, the method is very flexible since it can be used with continuous and discrete outcomes and more complex predictors, such as with mixed models. We keep the approach scalable to high-dimensions by relying on Automatic Differentiation Variational Inference and fully continuous prior choices.

The horseshoe prior, a widely used handy alternative to the spike-and-slab prior, has proven to be an exceptional default global-local shrinkage prior in Bayesian inference and machine learning. However, designing tests with frequentist false discovery rate (FDR) control using the horseshoe prior or the general class of global-local shrinkage priors remains an open problem. In this paper, we propose a frequentist-assisted horseshoe procedure that not only resolves this long-standing FDR control issue for the high dimensional normal means testing problem but also exhibits satisfactory finite-sample FDR control under any desired nominal level for both large-scale multiple independent and correlated tests. We carry out the frequentist-assisted horseshoe procedure in an easy and intuitive way by using the minimax estimator of the global parameter of the horseshoe prior while maintaining the remaining full Bayes vanilla horseshoe structure. The results of both intensive simulations under different sparsity levels, and real-world data demonstrate that the frequentist-assisted horseshoe procedure consistently achieves robust finite-sample FDR control. Existing frequentist or Bayesian FDR control procedures can lose finite-sample FDR control in a variety of common sparse cases. Based on the intimate relationship between the minimax estimation and the level of FDR control discovered in this work, we point out potential generalizations to achieve FDR control for both more complicated models and the general global-local shrinkage prior family.

High-dimensional mediation analysis is often associated with a multiple testing problem for detecting significant mediators. Assessing the uncertainty of this detecting process via false discovery rate (FDR) has garnered great interest. To control the FDR in multiple testing, two essential steps are involved: ranking and selection. Existing approaches either construct p-values without calibration or disregard the joint information across tests, leading to conservation in FDR control or non-optimal ranking rules for multiple hypotheses. In this paper, we develop an adaptive mediation detection procedure (referred to as "AMDP") to identify relevant mediators while asymptotically controlling the FDR in high-dimensional mediation analysis.

Gaussian graphical models emerge in a wide range of fields. They model the statistical relationships between variables as a graph, where an edge between two variables indicates conditional dependence. Unfortunately, well-established estimators, such as the graphical lasso or neighborhood selection, are known to be susceptible to a high prevalence of false edge detections. False detections may encourage inaccurate or even incorrect scientific interpretations, with major implications in applications, such as biomedicine or healthcare. In this paper, we introduce a nodewise variable selection approach to graph learning and provably control the false discovery rate of the selected edge set at a self-estimated level. A novel fusion method of the individual neighborhoods outputs an undirected graph estimate. The proposed method is parameter-free and does not require tuning by the user. Benchmarks against competing false discovery rate controlling methods in numerical experiments considering different graph topologies show a significant gain in performance.